PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7233_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28534.6 Da    PI: 9.8828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7233_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66e-1572123154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                 ++ +hn++Er+RR++ Ns f+ Lr++lP++   +++K ls  ++  + v+YI +L
  RrC7233_p1  72 KKLNHNANERNRRKKTNSLFSSLRSCLPSS---YAPKkLSIPQTISRSVQYIPEL 123
                 6789*************************7...55555**************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1463137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.51971123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-1272128No hitNo description
PfamPF000103.7E-1272123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-1372141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-977129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRALDPPLFP NCGRASTGEY ESYNLVRDNY KISTFLDFPV PKTYGVLHHQ TSLGASVSSE  60
GNGINNNSVV IKKLNHNANE RNRRKKTNSL FSSLRSCLPS SYAPKKLSIP QTISRSVQYI  120
PELKEEVKNL IQKKEDLLLR ESGQRGRYAK QQPKVVASYF STVLATKLRD NEVMVQISSS  180
KIRNFSIYNV LSGLEKDGFV LVDISSSSSR AKQLFYTLHL QVDKMDNYKL ICEDLSQRIL  240
YLYEECGNSF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651482.11e-155PREDICTED: transcription factor ORG3-like
SwissprotQ9M1K11e-118ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078CN821e-155A0A078CN82_BRANA; BnaA07g06270D protein
STRINGBra014971.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-119bHLH family protein